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WILD 7250 - Wildlife Population Analysis (updated 6 January 2016)

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Date
(Week of)

 

Links to notes & readings

14 January

Lecture

Population analysis: Theory and scientific process

 

Readings

Williams 1977, Johnson 1999

19 January

Lecture

Maximum-likelihood and information theoretic paradigms

Readings

Anderson et al. (2000), Anderson_Burnham_2002

 

Lab

MLE & AIC

 

Data/Examples

MLE & AIC spreadsheet

Right-click on link and save to disk

21 January

No Class

26 January

Lecture

Estimating survival rates – Kaplan-Meier and known fate models

 

Readings

Pollock et al. (1989), Conroy et al.(1989)

Lab

Lab – Introduction to Program MARK

 

Other resources

Program MARK – A gentle introduction Ch 16.

MARK Homepage

Data/Examples

Introduction to Program  MARK

Right-click on link and save to disk

28 January

Lecture

Design matrix & link functions (see notes for 2 Feb)

2 February

Lecture

Daily survival rates

Readings

Dinsmore et al. (2002)

Lab

Known fate & Nesting models

Data/Examples

lab_05b.xls, nestex.inp km3.inp

Right-click on link and save to disk

4 February

Lecture

Multinomial and CMR Models for closed populations

9 February

 

More Design Matrix

 

Lecture

DesignMatrix examples

 

Lab

lab_06_More Design Matrix.pdf

km4.inp

11 February

TITLES OF TERM PROJECTS DUE

Lecture

CMR Models for closed populations (cont’t)

 

Readings

Cooch and White Chapter 15

16 February

Lecture

Open populations and Goodness of fit

 

Readings

Cooch and White Chapter 5.

 

Lab

Multinomials, Closed Populations

 

Data/Examples

lab_06.xls, capmod.zip

 

Other resources

Huggins_1991.pdf, Pledger_2000.pdf

18 February

Lecture

Open populations and Goodness of fit (cont’d)

23 February

Lecture

Robust Design

 

Readings

Kendall_RbstDsn.pdf,  Nichols and Hines,

Lab

Band recovery/CJS models/GOF

 

Data/Examples

lab_07.xls, lab_07.zip

25 February

Lecture

Robust Design (cont’d)

1 March

 

Lab Reviews/Questions

 

Lab

Robust Design

 

Data/Examples

lab_08.xls, lab_08.zip , robust5.inp

3 March

Lecture

Lab Reviews/Questions

8, 10 March

No Classes meeting – work on term projects

15, 17 March

Spring Break

22 March

DETAILED OUTLINES OF TERM PROJECT DUE

 

Lecture

Time symmetrical models

 

Readings

Pradel

Lab

Time symmetry

 

Data/Examples

lab_09.xls

24 March

Lecture

Multistate models

 

Readings

Hestbeck_et_al_1991

29 March

Lecture

Multistate models (cont'd)

Lab

Multistate models

 

Data/Examples

deer.inp

31 March

Lecture (11:00 in 1223)

Variance Components

 

Readings

Program MARK: A gentle introduction, Appendix D

5 April

Lecture

Putting the estimates to work – Introduction to Matrix models

Lab (12:15 – 2:00 in 2216)

Variance components

 

Data/Examples

Copy of BLCKDUCK.inp
(MARK Example file)

7 April

Lecture

Matrix models (cont’d)

12 April

Lecture

Lab Reviews

 

Lab

Introduction to Matrix models using Poptools

 

lab12.xls

14-21 April

No Classes –work on term projects

26, 28 April

Student project presentations

 

Mark example files